Publications

Articles in Refereed Conferences

George Chin Jr., Grant Nakamura, Heidi Sofia and Daniel Chavarría-Miranda. “Graph Mining of Networks from Genome Biology”, to appear in Proceedings of the 7th IEEE International Symposium on Bioinformatics and Bioengineering (BIBE’07), Boston, MA, October 2007.
George Chin Jr., Daniel Chavarría-Miranda, Grant Nakamura and Heidi Sofia. “A High-Performance Computational Framework for Bionetwork Analysis”, in Proceedings of the 2007 Symposium on Computations in Bioinformatics and Bioscience (SCBB'07), Iowa City, IA, August 2007.
Ian Gorton, Daniel Chavarría-Miranda, Manojkumar Krishnan and Jarek Nieplocha. “A High-Performance Event Service for HPC Applications”, in Proceedings of the Third International Workshop on Software Engineering for High-Performance Computing Applications, Minneapolis, MN, May 2007.
Jarek Nieplocha, Andrés Márquez, John Feo, Daniel Chavarría-Miranda, George Chin Jr., Chad Scherrer and Nathaniel Beagley. “Evaluating the Potential of Multithreaded Platforms for Irregular Scientific Computations”, in Proceedings of the ACM International Conference on Computing Frontiers (CF'07), Ischia, Italy, May 2007.
Daniel Chavarría-Miranda and Andrés Márquez. “Assessing the Potential of Hybrid HPC Systems for Scientific Applications: a case study”, in Proceedings of the ACM International Conference on Computing Frontiers (CF'07), Ischia, Italy, May 2007.
Chad Scherrer, Nathaniel Beagley, Jarek Nieplocha, Andrés Márquez, John Feo and Daniel Chavarría-Miranda. “Probability Convergence in a Multithreaded Counting Application”, in Proceedings of the First Workshop on Multithreaded Architectures and Applications (MTAAP'07, part of IPDPS'07), Long Beach, CA, March 2007.
David Chassin, Peter Armstrong, Daniel Chavarría-Miranda and Ross Guttromson. “Gauss-Seidel Accelerated: Implementing Flow Solvers on Field Programmable Gate Arrays”, in Proceedings of the IEEE Power Engineering Society General Meeting , Montreal, Canada, June 2006.
Jarek Nieplocha, Andrés Márquez, Vinod Tipparaju, Daniel Chavarría-Miranda, Ross Guttromson and Henry Huang. “Towards Efficient Parallel State Estimation Solvers on Shared Memory Computers”, in Proceedings of the IEEE Power Engineering Society General Meeting , Montreal, Canada, June 2006.
Daniel Chavarría-Miranda, Jarek Nieplocha and Vinod Tipparaju. “Topology-aware Tile Mapping for Clusters of SMPs”, in Proceedings of the ACM International Conference on Computing Frontiers (CF'06), Ischia, Italy, May 2006.
Daniel Chavarría-Miranda and John Mellor-Crummey. “Effective Communication Coalescing for Data-Parallel Applications”, in Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming (PPoPP'05) , Chicago, IL, June 2005.
Cristian Coarfa, Yuri Dotsenko, John Mellor-Crummey, François Cantonnet, Tarek El-Ghazawi, Ashrujit Mohanty, Yiyi Yao and Daniel Chavarría-Miranda. “An Evaluation of Global Address Space Programming Languages: CoArray Fortran and Unified Parallel C”, in Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming (PPoPP'05) , Chicago, IL, June 2005.
Daniel Chavarría-Miranda, Guohua Jin and John Mellor-Crummey. “COTS Clusters vs. the Earth Simulator: An Application Study using IMPACT-3D”, in Proceedings of IPDPS'05: 19th International Parallel and Distributed Processing Symposium , Denver, CO, April 2005.
Yuri Dotsenko, Cristian Coarfa, John Mellor-Crummey and Daniel Chavarría-Miranda. “Experiences with Co-Array Fortran on Hardware Shared Memory Platforms”, in Proceedings of the 17th International Workshop on Languages and Compilers for Parallel Computing (LCPC 2004) , West Lafayette, IN, September 2004.
Daniel Chavarría-Miranda and John Mellor-Crummey. “An Evaluation of Data-Parallel Compiler Support for Line-Sweep Applications”, in Proceedings of PACT'02: Eleventh International Conference on Parallel Architectures and Compilation Techniques , Charlottesville, VA, September 2002. ( Selected as Best Student Paper ).
Alain Darte, Daniel Chavarría-Miranda, Robert Fowler and John Mellor-Crummey. “Generalized Multipartitioning for Multi-Dimensional Arrays”, in Proceedings of IPDPS'02: International Parallel and Distributed Processing Symposium , Fort Lauderdale, FL, April 2002. ( Selected as Best Paper in Algorithms ).
Daniel Chavarría-Miranda, John Mellor-Crummey and Trushar Tsarang. “Data-Parallel Compiler Support for Multipartitioning”, in Proceedings of Euro-Par 2001: European Conference on Parallel Computing , Manchester, England, August 2001.
Suvas Vajracharya and Daniel Chavarría-Miranda. “Asynchronous Resource Management”, in Proceedings of IPDPS'01: International Parallel and Distributed Processing Symposium , San Francisco, CA, April 2001.
Daniel Chavarría-Miranda and John Mellor-Crummey. “Towards Compiler Support for Scalable Parallelism using Multipartitioning”, in Proceedings of LCR2000: Fifth Workshop on Languages, Compilers and Run-time Systems for Scalable Computers , Rochester, NY, May 2000.

Articles in Refereed Journals

Alain Darte, John Mellor-Crummey, Robert Fowler and Daniel Chavarría-Miranda. “Generalized multipartitioning of multi-dimensional arrays for parallelizing line-sweep computations”, in Journal of Parallel and Distributed Computing , vol. 63, issue 9, September 2003. Special issue with the Best Papers from the 2002 International Parallel and Distributed Processing Symposium (IPDPS'02).
Daniel Chavarría-Miranda and John Mellor-Crummey. “An Evaluation of Data-Parallel Compiler Support for Line-Sweep Applications”, in Journal of Instruction Level Parallelism , vol. 5, February 2003. Special issue with selected papers from The Eleventh International Conference on Parallel Architectures and Compilation Techniques (PACT'02).
John Mellor-Crummey, Vikram Adve, Bradley Broom, Daniel Chavarría-Miranda, Robert Fowler, Guohua Jin, Ken Kennedy and Qing Yi. “Advanced Optimization Strategies in the Rice dHPF Compiler”, in Concurrency and Computation: Practice and Experience , special issue on High-Performance Fortran (HPF), vol. 14, issues 8-9, July-August 2002.

Invited Journal Articles

L.C. McInnes, T. Dahlgren, J. Nieplocha, D. Bernholdt, B. Allan, R. Armstrong, D. Chavarría-Miranda, W. Elwasif, I. Gorton, J. Kenny, M. Krishnan, A. Malony, B. Norris, J. Ray and S. Shende. “Research Initiatives for Plug-and-Play Scientific Computing”, in Journal of Physics: Conference Series, vol. 78, August 2007

Workshop Articles & Technical Reports

Daniel Chavarría-Miranda and Andrés Márquez. “Implementing Scientific Applications on Hybrid HPC Systems”, in Workshop on Tools and Compilers for Hardware Acceleration (TCHA’06), Seattle, WA, September 2006.
Daniel Chavarría-Miranda and David Chassin. "A Hardware-Accelerated Steady-State Power Flow Solver", Pacific Northwest National Laboratory Technical Report, October 2005.
Alain Darte, Daniel Chavarría-Miranda, Robert Fowler and John Mellor-Crummey. “Generalized Multipartitioning”, in informal proceedings of LACSI'01: Los Alamos Computer Science Institute 2001 Symposium , Santa Fe, NM, October 2001.
Alain Darte, Daniel Chavarría-Miranda, Robert Fowler and John Mellor-Crummey. “On Efficient Parallelization of Line-Sweep Computations”, in informal proceedings of CPC2001: Ninth International Workshop on Compilers for Parallel Computers , Edinburgh, Scotland, June 2001.
David Garza-Salazar and Daniel Chavarría-Miranda. “On the Performance of Snake Partitioning: A Data Decomposition Technique that Reduces Communication and Exploits Locality”, in Workshop on High Performance Computing in Developing Countries, Euro-Par 1997: European Conference on Parallel Computing, Passau, Germany, August 1997.